2021

2020

  • Kleshchevnikov V,[…], Arutyunyan A, Vento-Tormo R, Gerstung M,  James L, Stegle O,  Bayraktar OA. Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics. doi: https://doi.org/10.1101/2020.11.15.378125
  • Chan Zuckerberg Initiative Single-Cell COVID-19 Consortia, Ballestar E, Farber DL, Glover S, Horwitz B, Meyer K, Nikolić M, Ordovas-Montanes J, Sims P, Shalek A, Vandamme N, Vandekerckhove L, Vento-Tormo R, Villani A-C. Single cell profiling of COVID-19 patients: an international data resource from multiple tissues. bioRxiv 2020. https://doi.org/10.1101/2020.11.20.20227355
  • Reynolds G, Vegh P, […], Vento-Tormo R, Behjati S, Lisgo S, Villani AC, Bacardit J, Jones PH, O’Toole EA, Ogg GS, Rajan N, Reynolds NJ, Teichmann SA, Watt FM, Haniffa M. Developmental cell programs are co-opted in inflammatory skin disease. Science. 2021 Jan 22;371(6527):eaba6500. doi: 10.1126/science.aba6500.
  • Hoo R, Nakimuli A, Vento-Tormo R. Innate immune mechanisms to protect against infection at the human maternal-fetal interface. Front Immunol. 2020 Sep 10;11:2070.
  • Davidson S, Efremova M, […], Vento-Tormo R, Hagai T, Chen X, Haniffa MA, Shields JD, Teichmann SA. Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth. Cell Rep. 2020 May 19;31(7):107628.
  • Efremova M, Vento-Tormo M, Teichmann SA, Vento-Tormo R (2020) CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes. Nature Protocols. Apr;15(4):1484-1506.
  • Park JE, […] Vento-Tormo R, Bayraktar OA, Barker RA, Meyer KB, Saeys Y, Bonfanti P, Behjati S, Clatworthy MR, Taghon T, Haniffa M, Teichmann SA. A cell atlas of human thymic development defines T cell repertoire formation. Science. 2020 Feb 21;367(6480). pii: eaay3224.
  • Efremova M*, Vento-Tormo R*, Park J.P*, Teichmann SA,and James K. Immunology in the era of single-cell technologies. Annu Rev Immunol. 2020 Feb 19.

2019

  • Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL, Staniforth JUL, Vieira Braga FA, Botting RA, Popescu DM, Vento-Tormo R, […] (2019) Spatiotemporal immune zonation of the human kidney. Science. 365(6460):1461-1466. 
  • Popescu DM, Botting RA, Stephenson E, Green K, Webb S, Jardine L, Calderbank EF, Polanski K, Goh I, Efremova M, Acres M, Maunder D, Vegh P, Gitton Y, Park JE, Vento-Tormo R, […] (2019) Decoding human fetal liver haematopoiesis. Nature. 574(7778):365-371. 
  • Ramachandran P, Dobie R, Wilson-Kanamori JR, Dora EF, Henderson BEP, Luu NT, Portman JR, Matchett KP, Brice M, Marwick JA, Taylor RS, Efremova M, Vento-Tormo R, […] (2019) Resolving the fibrotic niche of human liver cirrhosis at single-cell level. Nature. 575(7783):512-518
  • Vieira Braga FA, Kar G, Berg M, Carpaij OA, Polanski K, Simon LM, Brouwer S, Gomes T, Hesse L, Jiang J, Fasouli ES, Efremova M, Vento-Tormo R, […] (2019) A cellular census of human lungs identifies novel cell states in health and in asthma. Nature Medicine. 25(7):1153-1163.

2018

  • Vento-Tormo R, […] (2018) Single-cell reconstruction of the early maternal-fetal interface in humans. Nature. 563(7731):347-353. 
  • Young MD, Mitchell TJ, Vieira-Braga FA, Tran MGB, Stewart B, Ferdinand J, Botting RA, Popescu DM, Loudon KW, Vento-Tormo R, […] (2018) Single cell transcriptomes from human kidneys reveal the identity of renal cancer cells. Science.  361(6402):594-599. 
  • Svensson V, Vento-Tormo R, Teichmann SA. (2018) Exponential scaling of single-cell RNA-seq in the last decade. Nature Protocols 13(4):599-604